Recent Publications

Joint pleiotropic and epigenomic partitioning paper (Kerner et al. 2026) and J-PEP software
MultiSuSiE fine-mapping paper (Rossen et al. 2026) and MultiSuSiE software (slides of ASHG 2023 talk)

Tissue-gene fine-mapping paper (Strober et al. 2025) and TGFM software (slides of ASHG 2023 talk)
GxE in UK Biobank paper (Durvasula et al. 2025) (slides of ASHG 2023 talk)
pgBoost SNP-gene linking paper (Dorans et al. 2025) and pgBoost software

scATAC-seq disease-critical cell types paper (Kim et al. 2024) (slides of ASHG 2021 talk)

Tissue co-regulation score regression paper (Amariuta et al. 2023) and TCSC software (slides of ASHG 2022 talk)
Age-dependent topic modeling paper (Jiang et al. 2023) and ATM software (slides of ASHG 2022 talk)

Gene co-regulation score regression paper (Siewert-Rocks et al. 2022) and GCSC software (slides of Biology of Genomes 2020 talk)
Cross-population prediction paper (Weissbrod*,Kanai*,Shi* et al. 2022) and PolyPred Software (slides of ASHG 2020 talk)
SNP-to-gene linking paper (Gazal et al. 2022) and S2G software (News & Views)
Enhancer-related genes paper (Dey et al. 2022) and GSSG software
PRS and family history paper (Hujoel et al. 2022) and PRS-FH software
Single-cell disease relevance score paper (Zhang*,Hou* et al. 2022) and scDRS software
Sc-linker paper (Jagadeesh*,Dey* et al. 2022) and Sc-linker software (slides of ASHG 2021 talk) (Research Highlight)

Case-case GWAS paper (Peyrot et al. 2021) and CC-GWAS software (slides of WCPG 2020 talk) (News & Views)
Cross-population genetic correlation in functional regions paper (Shi et al. 2021) and S-LDXR software (slides of ASHG 2019 talk)
LDpred-funct paper (Marquez-Luna et al. 2021) and LDpred-funct software


“Everything should be made as simple as possible, but no simpler.”

                                                                                      — Albert Einstein